rs263220026 SNP Detail

Summary

• ID
  rs263220026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85427899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTAATA AGCTTCGGGT
  ATATGCATGT GTTCACTTAA CGCGTAGGTG TGTACATTTA TGTTCGAGTT GTGTAAGTGG
  GTGCCTGTGC GTGTGAGCCC ATATGTGTGT TCCTGCCTAT AAGAACGCTC ACATCCTCCG
  TTCTGGATCT CTAGCTGTCA CCAGGGTCGC CTTCAGTGGG AGGAAAGCTG AAAGCTCTTG
  Y
  TTCGACGGGG AGGGGTGGGG TTGTCAGGTT GTGCCTACTC ACTGACCCGG GAACCAGCAT
  CCACCCGCTG CAGCCGTCTA GTCCCTGGAT CTGGGCGGCC CAAACTCGCG GGGTCCCCAA
  GGTGACCCGT GGCCCCCAGC CCGGGAAGCG CGCACGCTGG ATTCCCGCCC CGCCCGCCTG
  TCCGTCGCCG CTCACCGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369068638	MGP_WTSI_6_85400911	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263220026					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068638	MGP_WTSI_6_85400911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85427899 () rs orientation: forward

Symbol	Name	Function Class
Cct7	chaperonin containing TCP1 subunit 7	597 bp upstream
Cpgi17646	CpG island 17646	within coordinates
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	750 bp distal
Rr633223	regulatory region 633223	within coordinates
Rr633224	regulatory region 633224	321 bp proximal
Rr633225	regulatory region 633225	608 bp proximal
Rr633226	regulatory region 633226	1043 bp proximal
Rr633227	regulatory region 633227	1186 bp proximal
Tssr57418	transcription start site region 57418	571 bp upstream
Tssr57419	transcription start site region 57419	1066 bp upstream
Tssr57420	transcription start site region 57420	1088 bp upstream
Tssr57421	transcription start site region 57421	1124 bp upstream
Tssr61752	transcription start site region 61752	304 bp downstream
Tssr61753	transcription start site region 61753	912 bp downstream
Tssr61754	transcription start site region 61754	946 bp downstream
Tssr61755	transcription start site region 61755	1038 bp downstream