rs263225920 SNP Detail

Summary

• ID
  rs263225920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30817547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCTTGC TTGTGTGAGC
  TCGGGCAAGT GGTTCAACCT CTCTGAGCTT GGGCCACAAA CAACGTAACC ATGTTGGTTT
  CTAGAGGTAT TACAGTTTAC TCTGATAGTG GCAAGGTGCT TGGATAGGTT TAGGGCCAGG
  GTGCTTCAGA TGTGGTATCT GTGACATTCA GGAGGATGGG GACTGGGGGG CCGGGGGGGG
  R
  GAACTACAGT CTGTAATTTG ACAAATCAAT ACCCTTGAGT TTAAATCTGA CCTCTGCCAG
  CTGTGTGACT TTGAGAAAAT GACTAAGGTT CTCTGGGCCT CCATTGCCTC CAACAGCAGA
  AATAGAAAAA GACCACCACC ACAAACAACA AAAACAAACA AACAAACAAA AAAACAAGCA
  AAAATAACAA CAAGAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss370923009	MGP_WTSI_7_31903141	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs263225920					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370923009	MGP_WTSI_7_31903141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30817547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1998 bp distal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71934	transcription start site region 71934	1218 bp upstream