rs263233428 SNP Detail

Summary

• ID
  rs263233428
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62311434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTTGAC CAGTGAGGTA
  GATACATGAA AACATCATCC AGACAGACAG ACAGACAGAC TCAGTCCTCC AGAACCAACA
  CTCTTCAGAC AGAAACCTTT AAGTTCCATA CAAAGAGGAA CTGAACTATA CAAGAAAACA
  ATAAGCACTC AAATACAGTT TCTCTCTCTT GTTTGCAGCT TAAAAAATAA AATAAAATTT
  W
  AAAAAAGGCA GAAGGATGTG CCTCCCCTTC TGCAAATCTC TATACAATTT TATTCTAAAG
  TTATTACACT CAAGTTAAAT AGTCTGGTTA GTGTCCTGTC AAGGAGGGGT CTTAGAGAGT
  AGAAAGCCTG TATTACAGTG GCGAGTCATT TGTACTACAG TTCCTTCCTT GGGAGTCAAC
  GCTAAGGCTA GGCACAGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400901008	MGP_WTSI_18_62338017	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	T	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263233428					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	T	T	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400901008	MGP_WTSI_18_62338017	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62311434 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	within coordinates
Cpgi10125	CpG island 10125	603 bp proximal
Gm9949	predicted gene 9949	1672 bp upstream
Rr393783	regulatory region 393783	1236 bp upstream
Rr539062	regulatory region 539062	506 bp distal
Rr539063	regulatory region 539063	1875 bp distal
Rr539064	regulatory region 539064	528 bp proximal
Rr539065	regulatory region 539065	639 bp proximal
Rr539066	regulatory region 539066	1586 bp proximal
Rr539067	regulatory region 539067	1843 bp proximal
Tssr151487	transcription start site region 151487	1756 bp upstream
Tssr153622	transcription start site region 153622	501 bp upstream
Tssr153623	transcription start site region 153623	1585 bp downstream