rs263244506 SNP Detail

Summary

• ID
  rs263244506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTTGCC CAGAATATCT
  TCCAGGTTGT TTTCCAACTC AACTCTGCAA GAGCTGAGAT GACAGGTTTG CACCACCTCC
  TTGGCTCCCT GCTTCCTTTT GCAGTGATGG TGAACATGTC TCCAGGCAAT CCATCAGCAA
  AAATGGTCTC AACTCTGGAG CAGCCCTCCC ATGGAAGAAG GAGGAGCCAA GCAACACTAA
  Y
  TAGCTATAAT AAGGAAAAGA AATATAGGCA AGACATAAAT AGATCACTCT GTCTCTCTTT
  TGTCTCTCTA TGTGTTTTGT GTCTCTGTCT TCCTGTGTCT CTTTGTCTCT GTCCTTCTCT
  GTCTCTGTCT CTCTCTTTCT CTGTCTGTCT CTCTCTGTCT CTGTCTCTCT GTCTTTGTCT
  CTGTCTCGCT GTCTCTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384065034	MGP_WTSI_11_82932074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263244506					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384065034	MGP_WTSI_11_82932074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009398 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	6 bp upstream
Rr247350	regulatory region 247350	797 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	1883 bp downstream
Tssr103653	transcription start site region 103653	1775 bp downstream
Tssr103654	transcription start site region 103654	1722 bp downstream
Tssr103655	transcription start site region 103655	1690 bp downstream
Tssr103656	transcription start site region 103656	1654 bp downstream
Tssr103657	transcription start site region 103657	1604 bp downstream
Tssr103658	transcription start site region 103658	1573 bp downstream
Tssr103659	transcription start site region 103659	1551 bp downstream
Tssr103660	transcription start site region 103660	214 bp downstream
Tssr109644	transcription start site region 109644	1980 bp upstream