rs263246478 SNP Detail

Summary

• ID
  rs263246478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16886271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGTGT AGCCCTGGCT
  GTCCTGGAAC TCACTCTGTG ACCAAGCTGG CCTCGAACTC AGAAATTCAC CTGCCTCTGC
  CTCCCAAGTG CTGGGATTAA AGGCATGTGC CTCCACCTGA TGTGCTAAAG TCTCTCAGTA
  GTCAGAGCAC CCAGAGTGAC TGGGCTGTGG CTCCTTGTGT GTAGTCTAGC AGAGTGTGCC
  R
  AGGCTCTGTG CTCAGTCTCA GCATCAAATG CACCAGGTGT GCACACCTGT AATCCCAGCA
  GGCTGCACAA TTAGAATCTC AAGGTTAAAT ATGTCACCTC CAGCCACATA CAGACTGAAA
  CTGAAGGGGT ACAGAGGTTT CCATGAGCTT TAAAAGGATG GCAGCTCTTT TTCCTAAAGC
  AGGGTCTCTC TCCTACATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395512665	MGP_WTSI_16_17068500	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263246478					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395512665	MGP_WTSI_16_17068500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16886271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	1272 bp proximal
Gm59807	predicted gene, 59807	592 bp downstream
Rr316811	regulatory region 316811	530 bp proximal
Rr324980	regulatory region 324980	929 bp proximal
Rr328576	regulatory region 328576	406 bp distal
Tssr137265	transcription start site region 137265	1720 bp upstream
Tssr137266	transcription start site region 137266	1813 bp upstream
Tssr137267	transcription start site region 137267	1840 bp upstream
Tssr137268	transcription start site region 137268	1857 bp upstream
Tssr137269	transcription start site region 137269	1874 bp upstream
Tssr137270	transcription start site region 137270	1916 bp upstream
Tssr137271	transcription start site region 137271	1935 bp upstream
Ypel1	yippee like 1	1289 bp upstream