rs263249181 SNP Detail

Summary

• ID
  rs263249181
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115090298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGGGTC CTGTGGTTTG
  GAGAGTCCTC TGGTGCCCTA GATGCCCTCA GCTGGGTTCA TGCAGAAGAT GGCCAGACTG
  GCCCCAACCT GAATGGATCC CAGCCTCTGG TCTGGCAAAG TTCTCTTGTC TCTGTTCTTG
  CTTTCACAAG ACCCTCCGAG ATTCTTTGAC ACTGGTGTTG CTTTCCACTC ACCTGTGCTA
  M
  TGAGGTGATC CCGAGGTCCT GCAGCATGGA GAGCACTCTG GATCCCTTAG TAGCCCCTGC
  TGGGCTCAGA AGGAAGATGG TGGGAGTGGT CCCAACTAGA ATGGACCCCA ATCTCTGGTC
  TGGTGGGATT CCTCCATCCA TTTTCCTGCT GGCAGAAGAC CCTCTGTGAT TCTTTGAAGC
  TGATGTTGCA TTCCACTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss387453571	MGP_WTSI_12_116364889	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	A	C	A	A	A	A	C	C	C	C	A	A	A	C	A	C	A	A	C	C	A	A	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs263249181					SNP	C	C	C	C	A	C	C	A	C	A	A	A	A	C	C	C	C	A	A	A	C	A	C	A	A	C	C	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387453571	MGP_WTSI_12_116364889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115090298 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Rr387812	regulatory region 387812	1039 bp upstream