rs263255007 SNP Detail

Summary

• ID
  rs263255007
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:115715294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGGTG AGGACCAACG
  AGGTTTGCCA AGTGTTGGCT GTAAGAGAAG ATAGTTTTGA AAAGATGCCA AGTACTGATC
  TTATTTCTCC CAGTATCTGC ACTTTCAGTG AAAGCGAAAA AGTTTGCATT ATAAATTACA
  TACTTCAGAA AATCAGTAAG TGTAAATGTA GAACTTGGTA AAAGATCTCA GTAAGTCAGC
  W
  TTTAAAGTAA CCTTTCCCTC CATATTTGAG TATGATCCAT ATGTATGAAA ATGTTAAGAC
  AATATTAAGC CTGGTCTTTG TGGATTAACT CAACTGAAAA TTTCAATTAA CTTTGAGATG
  TGCTTGTAAG AGGTTTTAAA ATCTATCGTA TACATCTGTT TACACAAGCA TCTCATGCTG
  CCCTTCCTTT ATGTTGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324840430	CHEV_14_115877104	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263255007					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:115715294 () rs orientation: forward

Symbol	Name	Function Class
Gpc5	glypican 5	within coordinates
Rr297879	regulatory region 297879	94 bp distal
Tssr130199	transcription start site region 130199	387 bp upstream
Tssr130200	transcription start site region 130200	331 bp upstream
Tssr130201	transcription start site region 130201	282 bp upstream
Tssr130202	transcription start site region 130202	266 bp upstream
Tssr130203	transcription start site region 130203	235 bp upstream