rs263279325 SNP Detail

Summary

• ID
  rs263279325
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128512252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCAAGG TCTGTGTCAG
  GTTGCTCACG GAGAGGCATG CAGCAAGAAA GGATAGCTTG GAATGGCGGC AGAATGTGAA
  ATAGCGGGAG ACCAGGGGCA GTCGGGAGCC TTCGGTCACC AGGCAGTTGG AAGTGCTCCA
  CCCAGTTACC AGAGGCAGGG AAAGGAGGAG ACCTGGCAGC AGCCAGTACC TGCCCATCTC
  K
  ACACCAGAGG AATCAGAGCT GAGAGGACTT TAGACTCCTA TGCCTCCGGG TTACCAATAC
  TCTCATCCAC CTCAGAGTAC CTGCAAGGTC CGGGAGCACC GTCAAAGGGC CACTGTGGAA
  GCCGGGAAGT GAGGAGGCCG ACTTGGAGAT ACTTAGCACT GAGGCTTCGA GGGAGGGGAA
  ATGACACCAG GGCAACGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305834	CHEV_4_128295703	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263279325					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128512252 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	150 bp proximal
Rr599983	regulatory region 599983	532 bp proximal
Tlr12	toll-like receptor 12	within coordinates
Tssr43437	transcription start site region 43437	132 bp upstream
Tssr43438	transcription start site region 43438	113 bp downstream
Tssr43439	transcription start site region 43439	150 bp downstream
Tssr43440	transcription start site region 43440	169 bp downstream