rs263301145 SNP Detail

Summary

• ID
  rs263301145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAATCC TGACTGCTTC
  ATGTAAATAA TAGTATAGAC TTTCTATATT AAGTATAGAC TTACTATATT ATTAAGTAGA
  ATAATAGTAT GACTTGCTTC CTAAGGTTTG TGAAAATTGA ATTTTTAAAA GCAAAATAAC
  GTTTAGTACT AGCCCTACAG CCAAAGCTGA CCAAGTATTT ACTCTTAATT TTTCTCAATT
  R
  TTTATTTCAA TTTATTTCAG AATGTTCATG AAGATACGCA CACTGAATTT TAGAGAAAGT
  TAAGGAATTT TCAGTATTAA AAAAAACAAC ATTATTTCAT GTATAGACTT TTAAATTAAA
  TTCCAGTGTG ATTCTTTGAT GGAGACCAGC TAGTTGGGAG GCTAAGGCAG GAGAATTCCT
  GGGATCAGAT GTTCAAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895793	CHEV_3_116296496	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263301145					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	898 bp proximal
Rr397965	regulatory region 397965	1185 bp upstream
Rr583746	regulatory region 583746	872 bp proximal
Rr583747	regulatory region 583747	1169 bp proximal
Rr583748	regulatory region 583748	1250 bp proximal
Rr583749	regulatory region 583749	1443 bp proximal
Rr583750	regulatory region 583750	1611 bp proximal
Sass6	SAS-6 centriolar assembly protein	1404 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1381 bp upstream
Tssr35316	transcription start site region 35316	1238 bp downstream
Tssr35317	transcription start site region 35317	1270 bp downstream