rs263324993 SNP Detail

Summary

• ID
  rs263324993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22711696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTCTGCT tttcttttcc tgtttctgtc
  tgtctgtctg tctttcttcc tttctttctc ttctctcttt ctttctcttc ctctttcttt
  cttcttcctt cctttctctt ctttctcttt ctttcttcct ttttcttctt tctttctctt
  Y
  gctctttctt tcccttcctt ccttcctttc tcttctttct cttctctctt tcttttcctt
  cctttcttcc ttccttcctt ccttccttcc ttccttcctt ccttccttcc ttctttcctt
  cTtctttttg agacagaaag gtttctcttt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325113554	CHEV_16_22893019	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263324993					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22711696 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Rr513334	regulatory region 513334	1537 bp distal
Rr513335	regulatory region 513335	897 bp distal
Rr513336	regulatory region 513336	1036 bp proximal
Rr513337	regulatory region 513337	1385 bp proximal
Tssr4818	transcription start site region 4818	122 bp downstream
Tssr137555	transcription start site region 137555	1612 bp downstream
Tssr137556	transcription start site region 137556	1551 bp downstream
Tssr137557	transcription start site region 137557	895 bp downstream
Tssr137558	transcription start site region 137558	365 bp downstream
Tssr137559	transcription start site region 137559	169 bp downstream
Tssr137560	transcription start site region 137560	126 bp downstream
Tssr137561	transcription start site region 137561	101 bp downstream
Tssr137562	transcription start site region 137562	218 bp upstream
Tssr137563	transcription start site region 137563	1283 bp upstream
Tssr137564	transcription start site region 137564	1302 bp upstream
Tssr137565	transcription start site region 137565	1367 bp upstream
Tssr137566	transcription start site region 137566	1466 bp upstream
Tssr137567	transcription start site region 137567	1831 bp upstream
Tssr137568	transcription start site region 137568	1850 bp upstream
Tssr137569	transcription start site region 137569	1881 bp upstream
Tssr137570	transcription start site region 137570	1896 bp upstream
Tssr140501	transcription start site region 140501	797 bp upstream
Tssr140502	transcription start site region 140502	651 bp upstream
Tssr140503	transcription start site region 140503	613 bp upstream
Tssr140504	transcription start site region 140504	1404 bp downstream
Tssr140505	transcription start site region 140505	1477 bp downstream
Tssr140506	transcription start site region 140506	1884 bp downstream