rs263325374 SNP Detail

Summary

• ID
  rs263325374
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109748433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGCGTCC ATGGAGCAGC
  GGGAAGGGAG AAACTGCGGA GCGCCGCGTC CTAACGCTCC GGCGGCAGAC TGCTGAAGGA
  AGCGAGCGCA CGCGGACCGC CGAGGGACGG CGCCCGGGCC CCGAGCCCCG CAGGCCGGCT
  GCCCCTGGTG CGGCGCGGTG CGGCGGAGGG CAGCGGAGGC GAGTCGAGCG AGAGGAGCCG
  S
  GGGAGAGGCG GGCGCGGGCG GCGGCCGCAG CAATGCCGGG CCCGCTGCGG CTGCTCTGCT
  TCTTCGCCCT GGGGCTGCTC GGCTCGGCCG GGCCCAGCGG CGCGGCGCCA CCTCTCTGCG
  CTGCGCCCTG CAGCTGCGAC GGCGACCGTC GGGTGGACTG CTCCGGGAAG GGGTTGACGG
  CGGTACCGGA GGGGCTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss355230963	MGP_WTSI_2_109758245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	G	G	G	G	C	C	C	C	C	G	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs263325374					SNP	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	G	G	G	G	C	C	C	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355230963	MGP_WTSI_2_109758245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109748433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	within coordinates
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	mRNA-UTR
Rr397176	regulatory region 397176	429 bp downstream
Rr562509	regulatory region 562509	431 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	304 bp distal
Rr562512	regulatory region 562512	265 bp distal
Rr562513	regulatory region 562513	102 bp proximal
Rr562514	regulatory region 562514	1933 bp proximal
Tssr19307	transcription start site region 19307	496 bp downstream
Tssr19308	transcription start site region 19308	450 bp downstream
Tssr19309	transcription start site region 19309	432 bp downstream
Tssr19310	transcription start site region 19310	402 bp downstream
Tssr19311	transcription start site region 19311	352 bp downstream