rs263338206 SNP Detail

Summary

• ID
  rs263338206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53933545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGGGCTC CGGACGGCAG
  CCTGGGGCGG GAGCGGCACA GGAGCGCCCG TGGGCCGGTT CTCTGCTTTC CTGCCTGTCG
  GGGGGCCCGG CCGGCCGTCG GTAAGGGGAG GCCCACACGT CCTGACAGGC GCGAGCCGCC
  GGAGCCGGGG CGAGGCCTGA GGGGTCGGGG CCCTGGGAGG CGCCGCGGCC GCTTTCCGGG
  R
  TGCCACGGCC CGGGGCGCCG GAGCCTCGGA GCCGCTGCCC GCGCGGGGCC GGCGGGCGGG
  ACACGGGGAG CGGCAGGCTG CCCCCTGACA GCGCCGGGCC GGGCCTACTG CGGAGCGGGC
  GGCCGGGACA GCGCCGGGGC GCGGGCGCGG GCCCGGGGCG GCGAGTCAGT CGCGCTCCGG
  CTGCTCCGGT CTCTCGGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402802524	MGP_WTSI_19_54019604	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs263338206					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402802524	MGP_WTSI_19_54019604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53933545 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bbip1	BBSome interacting protein 1			487 bp upstream
Cpgi11070	CpG island 11070			within coordinates
Rr394562	regulatory region 394562			428 bp downstream
Rr549684	regulatory region 549684			945 bp distal
Rr549685	regulatory region 549685			1202 bp distal
Rr549686	regulatory region 549686			798 bp distal
Rr549687	regulatory region 549687			665 bp distal
Rr549688	regulatory region 549688			224 bp distal
Rr549689	regulatory region 549689			within coordinates
Shoc2	Shoc2, leucine rich repeat scaffold protein			Intron
				Noncoding-Transcript-Variant
Tssr5553	transcription start site region 5553			850 bp upstream
Tssr157049	transcription start site region 157049			1018 bp downstream
Tssr157050	transcription start site region 157050			247 bp downstream
Tssr157051	transcription start site region 157051			207 bp downstream
Tssr157052	transcription start site region 157052			802 bp upstream
Tssr159836	transcription start site region 159836			888 bp upstream
Tssr159837	transcription start site region 159837			859 bp upstream
Tssr159838	transcription start site region 159838			627 bp upstream
Tssr159839	transcription start site region 159839			482 bp upstream