rs263350209 SNP Detail

Summary

• ID
  rs263350209
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13252499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTACATTC TCTTCATACA
  CAACTTTCCC CTTGGTCTGA CCACACAGAG CTGGAACATT TCCTCCTCCA TATTTCCTCC
  TCCTCCTCCT CCTCCTCCTC CTCCTCCTCT TCTACCTCTT CTTCCCGCTC CTCCTCCTTC
  TTGTTGATTT AGTTGGTTAG TTGGTTAGTT GGTTGGTTGG CTTTTTGAGA CCTGGTCTCT
  S
  TCTGTACTTC TCTATCCTGG AGCTCACTAT GTAGACCAGG CTGGCCTTGA AACCACAGAG
  ATCCTCCTTC TTCTGCCTCC CAAGCCTAAG TCTTTCTTCC CTGTGACTTC CCTGTGACTG
  GCTGTTGCAA CCAAAACAAA TAAAAGAGAC ATTTGCAAGG TCAAATATGA TAGCCCCCTC
  CTTGTCCCTT TTCCATGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505070	CHEV_8_13202499	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263350209					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13252499 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	709 bp downstream
Cpgi20110	CpG island 20110	1065 bp distal
Gm56825	predicted gene, 56825	266 bp upstream
Grtp1	GH regulated TBC protein 1	1804 bp upstream
Rr659873	regulatory region 659873	1535 bp distal
Rr659874	regulatory region 659874	1016 bp distal
Rr659875	regulatory region 659875	786 bp distal
Rr659876	regulatory region 659876	277 bp distal
Rr659877	regulatory region 659877	within coordinates
Rr659878	regulatory region 659878	1225 bp proximal
Rr659879	regulatory region 659879	1316 bp proximal
Rr659880	regulatory region 659880	1470 bp proximal
Tssr76386	transcription start site region 76386	1712 bp downstream
Tssr76387	transcription start site region 76387	1528 bp downstream
Tssr80428	transcription start site region 80428	1863 bp upstream
Tssr80429	transcription start site region 80429	1071 bp upstream