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rs263357890 SNP Detail
Summary
  • ID
    rs263357890
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr15:59521490 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTACCTGCTG CTACCCCTAG
    CTGAGCGCGA GCATGTGTCC CGGGCACTGT GCATCCACAC CGGCCGCGAG CTGCGCTGCA
    AGGTAAGCAT CCTGGGGCGG AGGTTGCGGG TCTGGATCGT CCACAGAAGT GCCTAGGTTC
    CGGCCCACCG GGATCACAGT CCCGCCAGCG CTTGGGTTTG GCAGAGCAGA TAAGGGCGTT
    K
    AGTTGGATAA GGAGGGTATT TTGGTCAGCT TCGTGTTTTT GGAGGTTGAG TGCTTTCCTG
    TGGAGTGTTT TTTGGTGAGG GTTAGGCGGT CTAGAGGAAG TGCAGGGTTC AGTTCTTTTA
    TCTCTGTTCT TTTCTTTGGC GCTCTGTATT GCTAGCGCGT GGCGTTCCAT TTAAGTTTGG
    AATTGCAATG GGTTCCAGGG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394214958 MGP_WTSI_15_59481196 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263357890 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss394214958 MGP_WTSI_15_59481196 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:59521490 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7127 CpG island 7127 within coordinates
Gm56697 predicted gene, 56697 19 bp upstream
Rr311787 regulatory region 311787 within coordinates
Rr390806 regulatory region 390806 1776 bp upstream
Trib1 tribbles pseudokinase 1 within coordinates
Tssr4603 transcription start site region 4603 629 bp downstream
Tssr131384 transcription start site region 131384 1334 bp downstream
Tssr131385 transcription start site region 131385 1272 bp downstream
Tssr131386 transcription start site region 131386 1210 bp downstream
Tssr131387 transcription start site region 131387 1104 bp downstream
Tssr131388 transcription start site region 131388 1080 bp downstream
Tssr131389 transcription start site region 131389 1052 bp downstream
Tssr131390 transcription start site region 131390 954 bp downstream
Tssr131391 transcription start site region 131391 936 bp downstream
Tssr131392 transcription start site region 131392 1083 bp upstream
Tssr134444 transcription start site region 134444 1505 bp upstream
Tssr134445 transcription start site region 134445 1473 bp upstream
Tssr134446 transcription start site region 134446 962 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory