rs263373827 SNP Detail

Summary

• ID
  rs263373827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140909371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTCTGG AACTTTGAGT
  CCGTTGGCTT TGATGGGATT TTTTTTTTTT TAAACCAGGT ATAGCTGTGA CACACCCAGT
  GTGTCCTAGG GTACATCTTG TCACACCTGC AGCTTACCAC ATATTCATTC ATAGCATGCC
  TCTGGCATGC GCTAGACTCC AGATATTCAT AGCATACATT CAGCTCATCC CAAGCACACT
  Y
  ATAGTTCTCC TCAGCACCTC CAAGGCATAC CTGAAGTATA CCTTGGTACA CCCATGGCAT
  ACCTGGTTTA CACCAGACAC AACCAAGGCA TAATGTCAGT TTACCCTGGG TGAATACACA
  CCCATACACA CACACACACA CACACACACA CACACACACA CCTGTGGCTA ACCTGAGTCC
  CGGGCAGCCA GAAGGTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429782	MGP_WTSI_7_148515357	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263373827					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429782	MGP_WTSI_7_148515357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140909371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19932	CpG island 19932	732 bp distal
Deaf1	DEAF1, transcription factor	1768 bp upstream
Rr154690	regulatory region 154690	1230 bp proximal
Rr166953	regulatory region 166953	170 bp distal
Rr400715	regulatory region 400715	1304 bp downstream
Tmem80	transmembrane protein 80	within coordinates
Tssr69944	transcription start site region 69944	1576 bp downstream
Tssr69945	transcription start site region 69945	1319 bp downstream
Tssr69946	transcription start site region 69946	1279 bp downstream
Tssr69947	transcription start site region 69947	1217 bp downstream
Tssr69948	transcription start site region 69948	146 bp downstream
Tssr75631	transcription start site region 75631	1902 bp upstream
Tssr75632	transcription start site region 75632	1851 bp upstream
Tssr75633	transcription start site region 75633	1797 bp upstream
Tssr75634	transcription start site region 75634	1764 bp upstream
Tssr75635	transcription start site region 75635	1721 bp upstream
Tssr75636	transcription start site region 75636	1709 bp upstream
Tssr75637	transcription start site region 75637	1249 bp upstream