rs263408042 SNP Detail

Summary

• ID
  rs263408042
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13726080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCCCC TAGTGAAGAC
  CCGATTCCGG CAGACAGACT GAAGTCTTTC CTTCCCTCCT GTCTTATTTA CTATGTCATT
  CTGGAAAAGA AATCCTCTTT GTTTGAATGG AACTAAAACC TTTCCCTGTG TGCACAGTAG
  CCGATGCTAG GATTGAAGCA AGCACACTGT ACTGAAAGGG AAAGAAAGTC TTGGACCCTT
  S
  TCACCAACTG ACCTGATTCT GCCCCAGCAG TATTCCACAG CAACCTCCCC AGATCCTTGA
  GCAAAAGGGC ACAGCACCCC TGGAGCCTGG TGGACTCACT TGGTCAGAGG ATCTGGCTGA
  AGGAAACTGA AGCTGGCCAC CCTCACACAA GTAGTCTTTG CCCACAGAGG ACAGAAAGCA
  GCCCCTTTCC TCAGATGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373753216	MGP_WTSI_8_13676080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263408042					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373753216	MGP_WTSI_8_13676080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13726080 () rs orientation: forward

Symbol	Name	Function Class
4930442M18Rik	RIKEN cDNA 4930442M18 gene	within coordinates
Cpgi20115	CpG island 20115	228 bp proximal
Cpgi20116	CpG island 20116	716 bp proximal
Rasa3	RAS p21 protein activator 3	Intron
Rr400766	regulatory region 400766	1134 bp downstream
Rr659983	regulatory region 659983	1250 bp distal
Rr659984	regulatory region 659984	958 bp proximal
Rr659985	regulatory region 659985	1439 bp proximal
Rr659986	regulatory region 659986	1513 bp proximal
Rr659987	regulatory region 659987	1623 bp proximal
Rr659988	regulatory region 659988	1924 bp proximal
Tssr76418	transcription start site region 76418	1554 bp downstream
Tssr76419	transcription start site region 76419	1695 bp upstream
Tssr80459	transcription start site region 80459	286 bp downstream
Tssr80460	transcription start site region 80460	1432 bp downstream
Tssr80461	transcription start site region 80461	1456 bp downstream
Tssr80462	transcription start site region 80462	1495 bp downstream