rs263411262 SNP Detail

Summary

• ID
  rs263411262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACAGAG GCTAATATCA
  GAGTATTCTT GGAAGAGACA GGAGAAAATG AAAGCCAGTT TCTGCTCTTA CCTTATGTGC
  TTGTGTTCAG ACTCCCAAAC ATCAGGAGTG TCAGATAAAC TGGTCTGAAT CTCTGTCTGA
  AGCATGGAAC TGAAAAGAAT GTAGTTTCAG GGAAGAAAGG CAATAGAAGG AAGCCTGAGA
  W
  TATCTTCAAA GGGTCAGACT CAATTTACTT TCTAAAGAAG TAGCTAGGAA CTAGGGAATA
  ACTTAGAAAC AACAAGATTG TATATATGTG CATCCTGGCC CCATTGTTCC TTATCTGTAG
  GGATAAGCGT GCTTTTTTGT GTGTCTGTAT ATAACATAAC TGTTTACACA TAATACACTG
  AAATGGAGCC CTTCCTTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815800	CHEV_6_70676195	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263411262					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703185 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	245 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	234 bp upstream
Rr158	regulatory region 158	250 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	766 bp downstream
Rr399685	regulatory region 399685	354 bp downstream
Rr399686	regulatory region 399686	310 bp upstream
Tssr1880	transcription start site region 1880	649 bp upstream
Tssr56956	transcription start site region 56956	368 bp downstream
Tssr56957	transcription start site region 56957	229 bp upstream
Tssr56958	transcription start site region 56958	276 bp upstream
Tssr56959	transcription start site region 56959	294 bp upstream
Tssr56960	transcription start site region 56960	317 bp upstream
Tssr56961	transcription start site region 56961	331 bp upstream
Tssr56962	transcription start site region 56962	339 bp upstream
Tssr56963	transcription start site region 56963	388 bp upstream
Tssr56964	transcription start site region 56964	403 bp upstream
Tssr56965	transcription start site region 56965	409 bp upstream
Tssr56966	transcription start site region 56966	420 bp upstream
Tssr56967	transcription start site region 56967	435 bp upstream
Tssr56968	transcription start site region 56968	459 bp upstream
Tssr56969	transcription start site region 56969	495 bp upstream
Tssr56970	transcription start site region 56970	508 bp upstream
Tssr56971	transcription start site region 56971	528 bp upstream
Tssr56972	transcription start site region 56972	554 bp upstream
Tssr56973	transcription start site region 56973	592 bp upstream
Tssr56974	transcription start site region 56974	624 bp upstream
Tssr56975	transcription start site region 56975	657 bp upstream
Tssr61321	transcription start site region 61321	281 bp downstream
Tssr61322	transcription start site region 61322	446 bp downstream
Tssr61323	transcription start site region 61323	461 bp downstream
Tssr61324	transcription start site region 61324	551 bp downstream
Tssr61325	transcription start site region 61325	617 bp downstream
Tssr61326	transcription start site region 61326	652 bp downstream
Tssr61327	transcription start site region 61327	666 bp downstream
Tssr61328	transcription start site region 61328	757 bp downstream