rs263414911 SNP Detail

Summary

• ID
  rs263414911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:47721130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTATAG CTACATGTAA
  TTGGAAGAAA TGGCTGACTA TTTTTGGTGT TTAGTTCACT GAAGAAAATT TTGTTCAGAA
  AAATTGAGGT CTGTTTTGAG ATAATTTGAT TATCATTCGC GTCTTTTCTT TTTGATAAGG
  AAATCAGGAG TTCACTTCCA AGATGGAAAA CTCATCAGAT TCAGCATCGA CTTCACCTGA
  Y
  GCTCCTCAGC CCAGTGAGAA TCCACCATCA CCACCGACTT CACCTGCCGC TCCTCAGACC
  AGTGAGAATC CACCATCACC ACCGACTTCA CCTGCCGTTC CTCAGACCAG GGAGAATCCA
  CCATCACCAC CGACTTCACC TGCCGCTCCT CAGCCCAGGG AGAATCCACC ATCACCACCG
  ACTTCACCTG CCGCTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402629586	MGP_WTSI_19_47807181	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263414911					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629586	MGP_WTSI_19_47807181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47721130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11035	CpG island 11035			570 bp distal
Gm58934	predicted gene, 58934			1132 bp upstream
Rr370527	regulatory region 370527			1417 bp downstream
Rr406020	regulatory region 406020			452 bp downstream
Rr549123	regulatory region 549123			1143 bp distal
Rr549124	regulatory region 549124			1473 bp distal
Rr549125	regulatory region 549125			1332 bp distal
Rr549126	regulatory region 549126			1204 bp distal
Rr549127	regulatory region 549127			999 bp distal
Rr549128	regulatory region 549128			208 bp distal
Sfr1	SWI5 dependent recombination repair 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr156884	transcription start site region 156884			923 bp downstream
Tssr156885	transcription start site region 156885			894 bp downstream
Tssr156886	transcription start site region 156886			254 bp upstream
Tssr156887	transcription start site region 156887			961 bp upstream