rs263415055 SNP Detail

Summary

• ID
  rs263415055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142133304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGAAC CCTGGCAGCA
  TCAGCAGACT AAAGGCCGAG GGTTGGCCAT CACATGTAAG CTATTCACTG GTGTGGTGGC
  AGTTGGTCTC TGTCTCCCAT CACCCCCCAC ATCACCCTTG CTATACTCCC CTATACTTCC
  CACTATATCC TCCCCACTAC ACCCCTGCTA TATCCCCCCT GTCATCCTCC CCACCATACC
  Y
  CTTGCCATAC CCCCCACCAT ACTTCCCCTA TGGCCCCCAT ACTCTCTGCT ATACCCCCAC
  TATACCCTCC CTGCTATACC CCCACTATAC CCCCGCTATG TCCCCCACTA TACCCACACT
  ATACCGCCCC ACTACACCCC CATTATACCC CCACTATGCC CCTCCTGCCA TGCCCCCCAC
  TATGTCCCCC ATTATGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453202	MGP_WTSI_7_149765472	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263415055					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453202	MGP_WTSI_7_149765472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142133304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	745 bp proximal
Gm56421	predicted gene, 56421	1649 bp downstream
H19	H19, imprinted maternally expressed transcript	1421 bp upstream
Rr27	regulatory region 27	581 bp proximal
Rr370601	regulatory region 370601	681 bp upstream
Rr658231	regulatory region 658231	932 bp distal
Rr658232	regulatory region 658232	287 bp distal
Rr658233	regulatory region 658233	303 bp proximal
Rr658234	regulatory region 658234	643 bp proximal
Rr658235	regulatory region 658235	739 bp proximal
Tssr2461	transcription start site region 2461	1641 bp downstream
Tssr70221	transcription start site region 70221	1971 bp downstream
Tssr70222	transcription start site region 70222	1913 bp downstream
Tssr70223	transcription start site region 70223	1771 bp downstream
Tssr70224	transcription start site region 70224	1726 bp downstream
Tssr70225	transcription start site region 70225	1688 bp downstream
Tssr70226	transcription start site region 70226	1593 bp downstream
Tssr70227	transcription start site region 70227	1511 bp downstream
Tssr70228	transcription start site region 70228	1498 bp downstream
Tssr75833	transcription start site region 75833	1998 bp upstream
Tssr75834	transcription start site region 75834	1724 bp upstream
Tssr75835	transcription start site region 75835	1692 bp upstream
Tssr75836	transcription start site region 75836	1670 bp upstream
Tssr75837	transcription start site region 75837	1647 bp upstream
Tssr75838	transcription start site region 75838	1577 bp upstream
Tssr75839	transcription start site region 75839	1555 bp upstream
Tssr75840	transcription start site region 75840	1526 bp upstream
Tssr75841	transcription start site region 75841	1499 bp upstream
Tssr75842	transcription start site region 75842	1482 bp upstream
Tssr75843	transcription start site region 75843	1476 bp upstream
Tssr75844	transcription start site region 75844	1446 bp upstream
Tssr75845	transcription start site region 75845	1413 bp upstream