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rs263422786 SNP Detail
Summary
  • ID
    rs263422786
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:45826672 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGCTGCATT TATGTTTCCC
    AAGTCATCAA GCAACACACC AAGTAAGTTT CCCGGTTTTG GAGTGGTATG TCCTATGTCC
    CAGGTGAGGC ATTTAGAAAT AATTTTATAT ATCCAGCACG CGATCTTAGT CAAGACCCCC
    AAATTCCTTT TATACTGTCT GCGTTCTCCT CTGCTTAGCA GAGTTGTTAG GCAGATTTGT
    M
    AAGCACATCC GTCACGCTGG AGCATCTCCA AGCGGCTGCA GCCTAAACTG ACCCTGCCTT
    TCTCTTCCCA GTCCCCCAGA CTGTCTCATC GCGGACGGGC AGTTCCCGCC CGGACCCACG
    GGGTCCGAAG GACTGCGGAG GCCCTCGTCC AGGACGCCCT CGGAAAGTTT GACATCCCCA
    AGCCCCGGGC GGGCTCCGTA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss364768170 MGP_WTSI_5_46060569 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263422786 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss364768170 MGP_WTSI_5_46060569 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:45826672 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1600023N17Rik RIKEN cDNA 1600023N17 gene within coordinates
Cpgi15841 CpG island 15841 within coordinates
Ncapg non-SMC condensin I complex, subunit G 589 bp upstream
Rr367838 regulatory region 367838 252 bp upstream
Rr611093 regulatory region 611093 703 bp distal
Rr611094 regulatory region 611094 819 bp distal
Rr611095 regulatory region 611095 414 bp distal
Rr611096 regulatory region 611096 99 bp proximal
Rr611097 regulatory region 611097 340 bp proximal
Tssr46141 transcription start site region 46141 554 bp upstream
Tssr46142 transcription start site region 46142 577 bp upstream
Tssr46143 transcription start site region 46143 674 bp upstream
Tssr46144 transcription start site region 46144 903 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory