rs263429158 SNP Detail

Summary

• ID
  rs263429158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143011121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAAGTGT TTGTGAGAAT
  CATGGCAAAG AACAGAGGCC TGGCCGACCT TCACACAGAG GCCTCTCTGC TGTGTGTGTG
  CCACATGGCT CACTGTAGTC CTTGAGACTC CACGACTACC TGCCAGGTTT CTGGCCCAGC
  ATGCTCCTAA TAGTTGGGAC CTAACCCATA CCTCTGCTGT CCAGCACCTC AAGTACCATG
  Y
  CCACCCTCAA GACATCAAAG AAAGGGCTGC CCTAGCACAC ACCTCCATGG GCACATACAG
  TAAGTAGCTT TCTTTGCTGG GTTCTAATTC CTGGGCAAGC TGAGGGCTGC TGCAGGCAGC
  AGGGCCTGCC TTCCTTGAAG TATACCCTCT CAATGGGATG GGGGCATTTC TCAAAGTCTG
  ACCACACTGG GCCTCTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322476119	CHEV_7_150643289	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263429158					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143011121 () rs orientation: forward

Symbol	Name	Function Class
Cdkn1c	cyclin dependent kinase inhibitor 1C	955 bp downstream
Cpgi19981	CpG island 19981	1465 bp proximal
Tssr70288	transcription start site region 70288	1315 bp upstream
Tssr75936	transcription start site region 75936	1106 bp downstream
Tssr75937	transcription start site region 75937	1195 bp downstream
Tssr75938	transcription start site region 75938	1388 bp downstream
Tssr75939	transcription start site region 75939	1420 bp downstream
Tssr75940	transcription start site region 75940	1439 bp downstream
Tssr75941	transcription start site region 75941	1552 bp downstream
Tssr75942	transcription start site region 75942	1950 bp downstream
Tssr75943	transcription start site region 75943	1997 bp downstream