rs263432295 SNP Detail

Summary

• ID
  rs263432295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5876305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTCTGGC TGGTACCCCT TTCTCTCCCA
  GCCTCCCTTC AGCTCCCCAC TGGGTGGAAA GCAGACTTAC TCACAGCAGA GGGAATAGGT
  ACGGCCATCT AAGTCCCAGC CTGAGAGGTA CTCAGAGAGC TTGGGCCTTA CAAGCCCTCA
  R
  AAATGGGGGG AGTCAGAACA CATCCTGTAA GATGAGCAAA GGATTAATTC AACATGGGGG
  TGACAGGACC CTCATCTGTG ACTGCAGGAA CCCCAAGAGT TGAGTCACAT AAGGAACAAG
  ACCACTGGTT AAATGGCTTC TAGGTATGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717591	CHEV_19_5826277	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263432295					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5876305 () rs orientation: forward

Symbol	Name	Function Class
Gm55522	predicted gene, 55522	1570 bp upstream
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Tssr157766	transcription start site region 157766	270 bp upstream
Tssr157767	transcription start site region 157767	394 bp downstream
Tssr157768	transcription start site region 157768	490 bp downstream
Tssr157769	transcription start site region 157769	552 bp downstream
Tssr157770	transcription start site region 157770	642 bp downstream
Tssr157771	transcription start site region 157771	682 bp downstream
Tssr157772	transcription start site region 157772	1888 bp downstream