About   Help   FAQ
rs263438924 SNP Detail
Summary
  • ID
    rs263438924
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19432860 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCATCCCGAG TTTTTTCGCC
ATAGGATGGT TCCTAGTTGA GCCGGTACGC CGTGCACCGA CAGTCCCGTA CTCCTTCCTG
GAGGTAACCC CTCCACCTGC TCTGACTCTG GCAAAGGCTA GTTACCTCGA GTCCTTAGTT
TGTCCCCCAA GACTTCTATC GTGCTGCCTG CTTTTCCAAT TCTTGTGCCT GTTTCCTGGA
Y
TCCGGGGGAT CTCAAGGTTC CCAGCCCACA TCCTACCAAG GTCCCTGGGT GAATCCCCAG
CCCAGCTTGT CTTACCAGCT CCTTCCGAAA CAAGTCCTTA GCCTCCAGGG TCTGAGCAGG
GGATCGGATC CCAGACCGGT CCAATTATAG GACTCCCCCT GTCCCGCCCC CTCCTCAGGG
CTAGGGCGGG CTGTGCCAGC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754823 MGP_WTSI_7_20284284 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263438924 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754823 MGP_WTSI_7_20284284 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19432860 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E Intron
Noncoding-Transcript-Variant
Cpgi18507 CpG island 18507 1857 bp distal
Cpgi18508 CpG island 18508 134 bp distal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1016 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr643241 regulatory region 643241 1799 bp distal
Rr643242 regulatory region 643242 38 bp distal
Rr643243 regulatory region 643243 639 bp distal
Rr643244 regulatory region 643244 63 bp proximal
Rr643245 regulatory region 643245 1395 bp proximal
Tssr2121 transcription start site region 2121 1995 bp downstream
Tssr2122 transcription start site region 2122 1270 bp upstream
Tssr64891 transcription start site region 64891 1976 bp downstream
Tssr64892 transcription start site region 64892 1945 bp downstream
Tssr64893 transcription start site region 64893 1851 bp downstream
Tssr64894 transcription start site region 64894 1437 bp downstream
Tssr64895 transcription start site region 64895 1358 bp downstream
Tssr64896 transcription start site region 64896 1334 bp downstream
Tssr70995 transcription start site region 70995 1992 bp upstream
Tssr70996 transcription start site region 70996 1966 bp upstream
Tssr70997 transcription start site region 70997 1900 bp upstream
Tssr70998 transcription start site region 70998 1880 bp upstream
Tssr70999 transcription start site region 70999 1824 bp upstream
Tssr71000 transcription start site region 71000 1413 bp upstream
Tssr71001 transcription start site region 71001 1347 bp upstream
Tssr71002 transcription start site region 71002 1328 bp upstream
Tssr71003 transcription start site region 71003 1300 bp upstream
Tssr71004 transcription start site region 71004 1282 bp upstream
Tssr71005 transcription start site region 71005 937 bp upstream
Tssr71006 transcription start site region 71006 904 bp upstream
Tssr71007 transcription start site region 71007 842 bp upstream
Tssr71008 transcription start site region 71008 736 bp upstream
Tssr71009 transcription start site region 71009 674 bp upstream
Tssr71010 transcription start site region 71010 554 bp upstream
Tssr71011 transcription start site region 71011 530 bp upstream
Tssr71012 transcription start site region 71012 500 bp upstream
Tssr71013 transcription start site region 71013 110 bp downstream
Tssr71014 transcription start site region 71014 659 bp downstream
Tssr71015 transcription start site region 71015 784 bp downstream
Tssr71016 transcription start site region 71016 1020 bp downstream
Tssr71017 transcription start site region 71017 1469 bp downstream
Tssr71018 transcription start site region 71018 1510 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory