rs263442494 SNP Detail

Summary

• ID
  rs263442494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137742501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGATCTGG GACTATAGGC
  ATGTACATGC ACTGCCACAG CCAGCTAGGA TTTTTAAAAT ATACCTAAGA ACATACCTAA
  GAACAGTTCT TTTTTTTTTT TTTTTTTTTT TTTTTGTTTT TCGAGACAGG GTTTCTCTGT
  GTAGCCCTGG CTGTCCTGGA ACTCACTCTG CAGACCAGGC TGGCCTCGAA CTCAGAAATC
  Y
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCCACCACGC CCGGCTCTAA
  GAACAGTTCT GTTTGAGGAA AATTAATTAG AACCTATTTC CTTCCAAACC CATGAGTGAC
  ACCAGATGCT GCCTTTAGAT CCTGCTTTGG CTGAAAGATT CTTGCCCAGA ATGCCAGTAT
  GGGTGCCAAG AAAGAAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884344	MGP_WTSI_5_138185467	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	T	T	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263442494					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	T	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884344	MGP_WTSI_5_138185467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137742501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	1768 bp proximal
Gm57848	predicted gene, 57848	1773 bp upstream
Rr622970	regulatory region 622970	53 bp proximal
Rr622971	regulatory region 622971	1001 bp proximal
Tsc22d4	Tsc22 domain family, member 4	1773 bp upstream
Tssr49366	transcription start site region 49366	1512 bp upstream
Tssr49367	transcription start site region 49367	1714 bp upstream
Tssr49368	transcription start site region 49368	1728 bp upstream
Tssr49369	transcription start site region 49369	1874 bp upstream
Tssr49370	transcription start site region 49370	1944 bp upstream
Tssr49371	transcription start site region 49371	1999 bp upstream