rs263451602 SNP Detail

Summary

• ID
  rs263451602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48653834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTGAGG TGAAGTGGTG
  ACACTTCTGC CAGTTCTTTT GTTATGCAGG ATTGTTTTAA CTGTCTTGGG GGTTTTGTTT
  CATGTTTATT AACATGATAA GTGAGCATAT TTCTGGCTTC AGTGTGATAT TTAACTGTAA
  TAATTAACAT ATTAACTGTG TACCAGTCAA AGCAGGGGAG ATGAACAATT CCTCTCTCTC
  Y
  CTCTCTCTCT CTCTCCCTCC CTCCCTTCCT CCCCCCTCCC CCCTCCCCCT CCCCCTCTCT
  CTTTGGTCTG AGATAGGGGT TCTCTGTATA GCCTTGCCTG TCCTGAAACT CACTCTATAG
  ACCAGGCTGG CCTTGAACTC ACTGAGATCC TACCTGCCCC TGCCTTCCTT ACACTTTCTT
  TATGTTTGAG TCCTTGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss368226811	MGP_WTSI_6_48626899	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs263451602					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368226811	MGP_WTSI_6_48626899	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48653834 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	within coordinates
Gm46958	predicted gene, 46958	91 bp upstream
Rr629719	regulatory region 629719	1626 bp distal
Rr629720	regulatory region 629720	761 bp distal
Tssr56161	transcription start site region 56161	1691 bp downstream
Tssr56162	transcription start site region 56162	745 bp downstream
Tssr56163	transcription start site region 56163	710 bp downstream
Tssr56164	transcription start site region 56164	691 bp downstream
Tssr56165	transcription start site region 56165	478 bp downstream
Tssr56166	transcription start site region 56166	773 bp upstream