rs263460205 SNP Detail

Summary

• ID
  rs263460205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74702088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTACTGA TTAGACTCTA AGCCTGGCCC
  TGAAAGTTAT CAAATGTTCT CAGGGAGTGA AGAAGTGGGA AGATATTCAA GTTACAAAGT
  AGCTTTAGAA AGATACAGCA TGGCCTGAAC AGAGGTCCGA GCTCAGTTGT GTTTGTTGGG
  R
  GCCATTCTGT GAGCTGGGCT TATTAGGGCC CAAGACTTAA CTTAAAATGA ATCTATTTCC
  TGACTTGTAG TTTCCAAGTG ACTTTAGTTT TTTTGTTTGT TTGTttttgt ttttgagaca
  gggtttctct gtgcagccct ggctgtctgg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795112	CHEV_1_74709503	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263460205					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74702088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	723 bp distal
Gm70804	predicted gene, 70804	1516 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1535 bp distal
Rr413231	regulatory region 413231	1174 bp distal
Rr413232	regulatory region 413232	34 bp distal
Rr413233	regulatory region 413233	1110 bp distal
Tssr7442	transcription start site region 7442	1361 bp downstream
Tssr7443	transcription start site region 7443	1273 bp downstream
Tssr7444	transcription start site region 7444	1216 bp downstream
Tssr7445	transcription start site region 7445	1140 bp downstream
Tssr7446	transcription start site region 7446	1097 bp downstream
Tssr7447	transcription start site region 7447	813 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	within coordinates