rs263467464 SNP Detail

Summary

• ID
  rs263467464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGGGGTG AGTGAGGGGT
  CCCTGCAGTC GCCGTGCGAG GGGCGGGCTT GGGAGGCCAT TCGGGTAGCG TTCGAATCGC
  GCCAGGTCTG AGCCGGCTCG ACCCCGCGGG CCGCCCTCTT CCTCGGCTGC TGCTTCCGGA
  ACTCACTGCC GCGGGGGATC TGAGGCTCGG GGCTCTGTTA CCGGCTGGCG TTGTGACCTC
  R
  ACTTGTGGTC CAGCAGCATC TCTGCCTCGG TTTCCCCTTT GGTAAAACGT GCGCCATGAG
  TTCTAGTAGT GTGAGCTGGA AATGGAAGGC CTGGGTAAAA CCTTCCTGCC CAGCCCGGGT
  TGGTGGGCGT TCTTCTCCGG TACTGTTCGG CGTAGTTCTT AAACCGACAT TGCTTTTACT
  TACTGTTGTT GTTGTTGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809057	MGP_WTSI_4_155367637	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263467464					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809057	MGP_WTSI_4_155367637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6			879 bp upstream
Cpgi15496	CpG island 15496			within coordinates
Rr377473	regulatory region 377473			within coordinates
Rr606630	regulatory region 606630			933 bp distal
Rr606631	regulatory region 606631			141 bp distal
Rr606632	regulatory region 606632			830 bp distal
Rr606633	regulatory region 606633			556 bp distal
Rr606634	regulatory region 606634			254 bp distal
Rr606635	regulatory region 606635			within coordinates
Sdf4	stromal cell derived factor 4			Intron
				mRNA-UTR
Tssr1404	transcription start site region 1404			582 bp downstream
Tssr40748	transcription start site region 40748			1115 bp downstream
Tssr40749	transcription start site region 40749			341 bp downstream
Tssr40750	transcription start site region 40750			232 bp downstream
Tssr40751	transcription start site region 40751			212 bp downstream
Tssr40752	transcription start site region 40752			73 bp downstream
Tssr44987	transcription start site region 44987			1186 bp upstream
Tssr44988	transcription start site region 44988			854 bp upstream