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rs263474957 SNP Detail
Summary
  • ID
    rs263474957
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8059712 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGATCATTA GAACTATCGA
CCAAATTTTG AGCAGTGAGC TACAGTGGCC TCTTCCAGAA ATGTATTTGA GAGACCTGGA
TGTAGTGAAC ATTCCTCTTG CAAGACTGAC TCTGCCAGAC TTCCATGTAC CAGAAATCAC
AATTCCAGAA TTCACAATCC CAAATGTCAA TCTCAAAGAT TTACACGTTC CTGATCTTCA
Y
ATACCAGAAT TCCAACTTCC TCACCTCTCA CATACAATTG AAATACCTGC TTTTGGCAAA
CTGCATAGCA TCCTTAAGAT CCAATCTCCT CTCTTTATAT TAGATGCTAA TGCCAACATA
CAGAATGTAA CAACTTCAGG GAACAAAGCA GAGATTGTGG CTTCTGTCAC TGCTAAAGGA
GAGTCCCAAT TTGAAGCTCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064697 MGP_WTSI_12_8016518 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263474957 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064697 MGP_WTSI_12_8016518 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8059712 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 1000 bp downstream
Tssr112639 transcription start site region 112639 1893 bp downstream
Tssr112640 transcription start site region 112640 1851 bp downstream
Tssr112641 transcription start site region 112641 1799 bp downstream
Tssr112642 transcription start site region 112642 1725 bp downstream
Tssr112643 transcription start site region 112643 1636 bp downstream
Tssr112644 transcription start site region 112644 1422 bp downstream
Tssr112645 transcription start site region 112645 1320 bp downstream
Tssr112646 transcription start site region 112646 1291 bp downstream
Tssr112647 transcription start site region 112647 1119 bp downstream
Tssr112648 transcription start site region 112648 1097 bp downstream
Tssr112649 transcription start site region 112649 615 bp downstream
Tssr112650 transcription start site region 112650 535 bp downstream
Tssr112651 transcription start site region 112651 483 bp downstream
Tssr112652 transcription start site region 112652 453 bp downstream
Tssr112653 transcription start site region 112653 434 bp downstream
Tssr112654 transcription start site region 112654 420 bp downstream
Tssr112655 transcription start site region 112655 397 bp downstream
Tssr112656 transcription start site region 112656 377 bp downstream
Tssr112657 transcription start site region 112657 363 bp downstream
Tssr112658 transcription start site region 112658 330 bp downstream
Tssr112659 transcription start site region 112659 251 bp downstream
Tssr112660 transcription start site region 112660 127 bp downstream
Tssr112661 transcription start site region 112661 95 bp upstream
Tssr112662 transcription start site region 112662 339 bp upstream
Tssr112663 transcription start site region 112663 574 bp upstream
Tssr112664 transcription start site region 112664 599 bp upstream
Tssr112665 transcription start site region 112665 764 bp upstream
Tssr112666 transcription start site region 112666 773 bp upstream
Tssr112667 transcription start site region 112667 820 bp upstream
Tssr112668 transcription start site region 112668 958 bp upstream
Tssr112669 transcription start site region 112669 1043 bp upstream
Tssr112670 transcription start site region 112670 1096 bp upstream
Tssr112671 transcription start site region 112671 1211 bp upstream
Tssr112672 transcription start site region 112672 1790 bp upstream
Tssr112673 transcription start site region 112673 1833 bp upstream
Tssr112674 transcription start site region 112674 1934 bp upstream
Tssr112675 transcription start site region 112675 1961 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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