rs263481932 SNP Detail

Summary

• ID
  rs263481932
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCCTG GGGTTGGCCT
  GAGCGGCAGG CCTGCGGGTG TCTGGGTATC TGACGGAGAA GCTCTCTCCG GCGTCGCGGG
  AGCTCGGCCT CCTGCTCTGT GGGATAGAGG GCTTTCTGTG GCGAGGGAGG CGGAGGAGTG
  GAGGAGGAGG GCTACGGGGT TGCTGAAGAG AAGGGAGCTG GGGGGAGCGC GCTTTCTGTG
  G
  TGGGGGGACG GGGTGGGGAA AGGGGGAGCT GAGTGGGGTG CGGGGACGGG GGGAGGGCTT
  TCTGTGGTGA GGAGGGAGGG GAAAGGGGGA GGGAGAGTGG GCGGGGCTTT GTGGAGAAGA
  TGGACGGGGC TGGGGAGGAG GGCGGAGTCT TTGACCATAG TAAACCCAAA GGGGCAGATG
  CTGCTTTCTG ACACCTCGGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss402629560	MGP_WTSI_19_47806521	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs263481932					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629560	MGP_WTSI_19_47806521	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	within coordinates
Gm58934	predicted gene, 58934	472 bp upstream
Rr370527	regulatory region 370527	757 bp downstream
Rr406020	regulatory region 406020	within coordinates
Rr549123	regulatory region 549123	483 bp distal
Rr549124	regulatory region 549124	813 bp distal
Rr549125	regulatory region 549125	672 bp distal
Rr549126	regulatory region 549126	544 bp distal
Rr549127	regulatory region 549127	339 bp distal
Rr549128	regulatory region 549128	within coordinates
Sfr1	SWI5 dependent recombination repair 1	Intron
Tssr156884	transcription start site region 156884	263 bp downstream
Tssr156885	transcription start site region 156885	234 bp downstream
Tssr156886	transcription start site region 156886	914 bp upstream
Tssr156887	transcription start site region 156887	1621 bp upstream