rs263514005 SNP Detail

Summary

• ID
  rs263514005
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGCGGGC TCCGGGACGG CCGTGCTGCT
  GCAGCCCACC ACAAGACACC CCTCCCCGGG ACTGCCCGCC TAACGTGCCC ACCCTGCCCA
  GAAGCCTAGT CTGCACCCGC CAGCAGGCGT CCAGTTGCAC CCCTTCTTCT GGGTTTGCTC
  S
  GGTTTCCCCC AGTACTTCTC GAACTTTTTT TTTTTTTTTC CTTTTGGTGA GACACAAAGC
  ACTGTTTTGA ACTTCCCGGA CACCAAAGCC TTATACCAGG GAATTAATGC ACAGCCACTG
  GGGTTTGATA CTGGCTGTTC TCAGAAAATG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720085	CHEV_5_149865248	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263514005					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	13 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	187 bp proximal
Hmgb1	high mobility group box 1	615 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1656 bp downstream
Rr399531	regulatory region 399531	361 bp downstream
Tssr1757	transcription start site region 1757	442 bp downstream
Tssr49872	transcription start site region 49872	463 bp downstream
Tssr54618	transcription start site region 54618	1964 bp upstream
Tssr54619	transcription start site region 54619	1693 bp upstream
Tssr54620	transcription start site region 54620	619 bp upstream
Tssr54621	transcription start site region 54621	601 bp upstream