rs263516401 SNP Detail

Summary

• ID
  rs263516401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90652687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTGGAG ACAGGATCTC
  ATTATATACT TCTCTGGCTT GAAACTCACA CATAGACTAA GCTGGCCTTG AACTCAGAGA
  GAGTGCCAGT GTAGGGCTTC CAGGAGCTGT GGCTAGAGGT ACGTTGCCAT GACCAGCATC
  TAACCTATTC TTTTGAGGAA GGGCTTCTCC TTGAATGTGA GGCTCACATT TTCTCTGCTT
  K
  CCCTATCAAA TGTCATCTCT CTACCCTTTG CTGGTCTGGA ATTACAGGTG TGTACAGAAT
  ATCTGGTTTG TTGCCGGTCC TGGGATCTGA ACTCTGGTCC TTATGATCTC AAAGCAAGCA
  CTCAACAGCA AAGCCATCTC TCTATTCCAT CCTTGAACTT CTGACCCTCC TGCCTCTTCT
  GCTGGGATTA TAGGCATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391269	CHEV_2_90662500	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263516401					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90652687 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	279 bp upstream
Rr560574	regulatory region 560574	811 bp proximal
Rr560575	regulatory region 560575	1432 bp proximal