rs263520225 SNP Detail

Summary

• ID
  rs263520225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74529654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTGTC GTCTCTCCCT
  GCCTCCCCTC CGCCCCTCGC TCCCTTGTCT GCAAACCCCC CTCTTCCTAG ACAACCCTGC
  AGCGAACTGG ATCCACGCTC GCTCCACCCG GAAAAAGCGC TGTCCCTACA CCAAATACCA
  GACGCTAGAG CTGGAGAAGG AATTCCTCTT CAACATGTAC CTCACCCGGG ACCGGCGCTA
  Y
  GAGGTGGCCA GGATTCTGAA CCTTACAGAG AGACAAGTCA AAATCTGGTT CCAGAACCGT
  AGGATGAAAA TGAAAAAGAT GAGCAAGGAG AAGTGCCCTA AAGGAGACTG ACCCAGTGCG
  GGTCTGGCCT GCAGCACTCA AAAGGCAGCG GGTTTTTTTG TTTGTTTGTT TGTTTGTTTT
  GTTTTTTGTT TTTTGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484962	MGP_WTSI_2_74537367	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263520225					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484962	MGP_WTSI_2_74537367	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74529654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11799	CpG island 11799	within coordinates
D2Mit36	DNA segment, Chr 2, Massachusetts Institute of Technology 36	1806 bp distal
D2Mit38	DNA segment, Chr 2, Massachusetts Institute of Technology 38	1812 bp distal
D2Mit38.1	DNA segment, Chr 2, Massachusetts Institute of Technology 38.1	1903 bp distal
D2Tfv10	DNA segment, Chr 2, Thomas F. Vogt 10	1804 bp distal
D2Tfv11	DNA segment, Chr 2, Thomas F. Vogt 11	359 bp proximal
Gm14396	predicted gene 14396	1927 bp downstream
Gm28793	predicted gene 28793	1724 bp upstream
Gm56188	predicted gene, 56188	1696 bp downstream
Gm75671	predicted gene, 75671	1531 bp upstream
Hoxd9	homeobox D9	Coding-Synonymous
Igs15	intergenic site 15	within coordinates
Rr559358	regulatory region 559358	1573 bp distal
Rr559359	regulatory region 559359	1041 bp proximal
Rr559360	regulatory region 559360	1542 bp proximal
Tssr18414	transcription start site region 18414	1636 bp downstream
Tssr18415	transcription start site region 18415	1559 bp downstream
Tssr18416	transcription start site region 18416	1359 bp downstream
Tssr18417	transcription start site region 18417	1328 bp downstream
Tssr18418	transcription start site region 18418	1302 bp downstream
Tssr18419	transcription start site region 18419	1284 bp downstream