rs263528582 SNP Detail

Summary

• ID
  rs263528582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23005719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGCTAT GAAAGTTTGT
  GTACCTTACC TATATGCTTA TTGTTAGATA ATTTTAAGAG TTAAGATCGC CAATCTTGGC
  AAGTCTTTTT ATATTCATTG TAATTCTTGT CAATTAACCA ATTGTGTAGA TCCTAATTTA
  AATAAGGAAT CTACTGTTAT GTTTTTGTTA GACCTGCTTA TGTTTTGCTG CCTATTAGAG
  Y
  TAGGAAACGA TCCTTGGTTT AAAAATCTGA AAATGCAAAC TTTAAAAGGT ATCTACCACA
  GCTTTAGATC AGCAGCTACA TACTGCCCAT TTTGTTAATG ATAAGCATAG GAATATTTCC
  ATAGCTTTGT CAGAGCAACA TATTATATAG ATAAAAATTT AGAGGCAAAA GACGTCTTAG
  AAGTCTTAGC ATAGGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	MA/MyJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ
ss387973922	MGP_WTSI_13_22913418	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	MA/MyJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ
rs263528582					SNP	C	C	C	T	C	C	C	C	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387973922	MGP_WTSI_13_22913418	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23005719 () rs orientation: forward

Symbol	Name	Function Class
Rr285916	regulatory region 285916	within coordinates
Rr285917	regulatory region 285917	1139 bp proximal