rs263538697 SNP Detail

Summary

• ID
  rs263538697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43059289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccaaccct taggagggag agaagcaaga
  cgatcaggag ttcgaggtta tccttggcta tgtaacATAT ATACATGATA GAATCCATGA
  TCTTGTATAA ATGGAGCAAA GGTTGCTGGG GAGATGAGTA GGCTGATAAA GAGTTTGACA
  Y
  ACagccaggc gcggtggtgc acacctttag tcccagcact tgggaggaag aggcaggcga
  atttctgagt ttgaggccat cctggtctac agagtgagtg ccaggtcagc cagggctaca
  cagagaaacc ctgtctcaaa aaaaaaaaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196844	CHEV_7_50665235	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263538697					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43059289 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	1651 bp distal
Rr645954	regulatory region 645954	1291 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	1654 bp downstream
Tssr65985	transcription start site region 65985	1645 bp downstream
Tssr65986	transcription start site region 65986	1609 bp downstream
Tssr65987	transcription start site region 65987	1592 bp downstream
Tssr65988	transcription start site region 65988	1580 bp downstream
Tssr65989	transcription start site region 65989	1347 bp downstream
Tssr65990	transcription start site region 65990	1326 bp downstream
Tssr65991	transcription start site region 65991	603 bp downstream
Tssr65992	transcription start site region 65992	592 bp downstream
Tssr65993	transcription start site region 65993	564 bp downstream
Tssr65994	transcription start site region 65994	445 bp downstream