rs263540382 SNP Detail

Summary

• ID
  rs263540382
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16964095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACAAGA ATGAAATAAC
  TTGGCATCAT CATTGAGTGA TGGAGAAAGG TAGGTGGCTG GTTTTTTTCT CAGAGAAAAT
  AATGGAAGGA CAATATACTG CCCAGAAACT TAGTAATGAT AAACACTGAG AAGAGCAAGG
  GGAATTTCTC TTGAATATAT TTCTCCTTTT CGACATTAAA AAAAATTACA GTTCAAAAAT
  W
  AAAAAATGAG CTAGAGAACT CAGTGGTTAG GAAAGCTTAC AGTTCTTGCA AAGGACTGAA
  GTTCGGTTAC CAGTATGCGT TCACATTGTG GATCAAAACC AGGCGCGCAT GCACACACGC
  GCACACACAC ACACATATGC GTGTGTGTAT TTATGTATGT ATATATATAT ACATATATAT
  ATATATACAC GTGTATACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395514162	MGP_WTSI_16_17146324	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263540382					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395514162	MGP_WTSI_16_17146324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16964095 () rs orientation: forward

Symbol	Name	Function Class
Ccdc116	coiled-coil domain containing 116	within coordinates
Cpgi8008	CpG island 8008	590 bp proximal
Gm60758	predicted gene, 60758	1732 bp downstream
Rr404703	regulatory region 404703	389 bp upstream
Rr512312	regulatory region 512312	1600 bp distal
Rr512313	regulatory region 512313	1452 bp distal
Rr512314	regulatory region 512314	216 bp proximal
Rr512315	regulatory region 512315	610 bp proximal
Rr512316	regulatory region 512316	954 bp proximal
Rr512317	regulatory region 512317	988 bp proximal
Tssr137273	transcription start site region 137273	1609 bp downstream
Tssr137274	transcription start site region 137274	708 bp upstream
Tssr140169	transcription start site region 140169	1830 bp upstream
Tssr140170	transcription start site region 140170	1780 bp upstream
Tssr140171	transcription start site region 140171	1344 bp downstream
Tssr140172	transcription start site region 140172	1984 bp downstream
Ydjc	YdjC homolog (bacterial)	718 bp upstream