rs263540946 SNP Detail

Summary

• ID
  rs263540946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152066788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTATTGA ATTGATCTGA
  GAGTTTAGGG CACGTTATGC AAACATTGTA CCAATTGAGC TACACCCCCA GACATAGACC
  TCTGGTTTGT GACTGGTCTC AAGCACACCA GGCAGGCCTC AAACTGCTAA CCCACTGCCT
  CCACTGGCTG TCCATCCATC ACCACACCCT GCTGGGCAAC CTTCAGGTCT CCTTTTGTAA
  Y
  CACTTCAGTT CACAGATGGT TTAGTGGCTA TTTCTGGTTG TCAACTTGAC TATATCTGGA
  ATGAACTACA ATCCAGAATT GGAAGGCTCA CCTGTGATCC TGATCTGGAG CCTGGGAGAT
  ACAAGTTTCT GACTGGATCT TGGCATGGAG ATCTTGTGGC ATAGTGGCTA TGAATCCCAG
  AAGATTAAGA CAGGGAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356147168	MGP_WTSI_2_152050604	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	C	C	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263540946					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	C	C	C	T	C	T	C	T	C	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356147168	MGP_WTSI_2_152050604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152066788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12441	CpG island 12441	1501 bp proximal
Csnk2a1	casein kinase 2, alpha 1 polypeptide	1971 bp upstream
Gm57421	predicted gene, 57421	within coordinates
Rr55821	regulatory region 55821	812 bp proximal
Rr374080	regulatory region 374080	within coordinates
Rr397394	regulatory region 397394	1809 bp upstream
Tssr20780	transcription start site region 20780	1672 bp upstream
Tssr20781	transcription start site region 20781	1940 bp upstream
Tssr26784	transcription start site region 26784	1853 bp downstream