rs263542625 SNP Detail

Summary

• ID
  rs263542625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121979565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAAAGT CGTGGAGGTA
  GAAATATGGC AGAGACCAGA TTTAAACCTG ACCCAACACT GGACTTAATT GTGGAAGGGA
  TGGTTCTTGT CCAGAGAATT CCAGGCATGA TGAACCTGTG GCATTTAGCA TGTTCTTGTT
  TCCAAAACCT CAAATGCAAG GAAAAATGTG GTTTATGCTA ATTTAAATTT ATGGGGACAA
  R
  AAGAATTCAA AGCTTTACTG AGACCTTCAT TCTAGCTGGC CACAGTTTTC AGGTTTTCCT
  CTCCCTACTG CCTTCCATGG GTGAATAAGA GGCTGCTCTT CAGAGACCGT GCACACTGAA
  TAGATGTGTA TCTGGGAGTA TATTATGGCT GGGCATAGTT GTGCACATCT ATAATCTCAG
  TATTTAGGAG ACTGAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480692	MGP_WTSI_2_121974820	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263542625					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480692	MGP_WTSI_2_121974820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121979565 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	840 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr397252	regulatory region 397252	1355 bp downstream
Rr563912	regulatory region 563912	1388 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	1590 bp downstream
Tssr19805	transcription start site region 19805	1388 bp downstream
Tssr19806	transcription start site region 19806	1356 bp downstream
Tssr19807	transcription start site region 19807	80 bp upstream
Tssr19808	transcription start site region 19808	133 bp upstream
Tssr19809	transcription start site region 19809	477 bp upstream
Tssr19810	transcription start site region 19810	1478 bp upstream
Tssr19811	transcription start site region 19811	1791 bp upstream
Tssr19812	transcription start site region 19812	1826 bp upstream
Tssr19813	transcription start site region 19813	1850 bp upstream
Tssr19814	transcription start site region 19814	1873 bp upstream
Tssr19815	transcription start site region 19815	1889 bp upstream
Tssr19816	transcription start site region 19816	1905 bp upstream
Tssr19817	transcription start site region 19817	1928 bp upstream
Tssr19818	transcription start site region 19818	1951 bp upstream
Tssr25954	transcription start site region 25954	1564 bp upstream
Tssr25955	transcription start site region 25955	1826 bp downstream
Tssr25956	transcription start site region 25956	1903 bp downstream