rs263558876 SNP Detail

Summary

• ID
  rs263558876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32007016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCAATTT ATTGACTACT
  GTGCGGGGCT GAGAAACAGG ATTGTCAGGG TACACACTCG TATATCAGAT AGTTGGAAAC
  GCCTAAGTCA ATCCCTTATA AACAGAGGAC ATTTATAGCC TAAGCACACT AAGAGGCAGC
  AACACTCATT TAATACACCT TCACTCTGAG TGCTAAAACT AGCGATATTT TATGATTATC
  M
  TATATATATA TATACTATGA TAATGCAGAT AAATACATAA GGAAATACAT ATTAATGTTA
  GGAACCAATA ACTTTACTAA AAAAAACAAA TACATATATA AAACAAAGGA CATGAAATTG
  TCATTATCTG TGGACAATGG CCCAGACAGC CACTGGGGAC CTGATGTCAT GCTACCAAGA
  GCAGTGTCGT ATGGCCATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	RF/J
ss382899976	MGP_WTSI_11_31957016	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	RF/J
rs263558876					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382899976	MGP_WTSI_11_31957016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32007016 () rs orientation: forward

Symbol	Name	Function Class
Nsg2	neuron specific gene family member 2	within coordinates
Tssr100825	transcription start site region 100825	653 bp upstream
Tssr100826	transcription start site region 100826	746 bp upstream
Tssr100827	transcription start site region 100827	1826 bp upstream
Tssr100828	transcription start site region 100828	1873 bp upstream