rs263566468 SNP Detail

Summary

• ID
  rs263566468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56260043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACAGAG CCACAGAGCA
  TGTCCAAGCT GCTCTTCCTG TCACTTGCCC TCTGGGCCAG CCGCTCCCCT GGTTACACTG
  AAACAGGTAG GTGACCACAG GGGGACTGGG GCACCTGGGC GGAGGGAACT AGTCCTTCCC
  TTTCAGTTTA AGGTCATATC TACCATCAGC TGGGAACTCA CACCTATACC CGTTGGACCT
  S
  TTCTCCTTCT ACTACAGGGA TGGGGAAACT GAGGCATGAA GCCTCAAAAC CTCATTTATC
  CAGGCAGAGG CACCCTTGAA CTTAGACATT TGTGGAGCTA GACAGTTGAC TCTCAGAAAC
  CCGAAACCTG AAGCCTCACC TTTGTGACTC AGCAGCTGTA AAAGAAAAGA AAACGAAAAA
  GAAATGTAGA CAATACTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398548951	MGP_WTSI_17_56092466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263566468					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398548951	MGP_WTSI_17_56092466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56260043 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	1728 bp downstream
Rr340009	regulatory region 340009	within coordinates
Rr342199	regulatory region 342199	1843 bp distal
Tssr145247	transcription start site region 145247	344 bp downstream
Tssr145248	transcription start site region 145248	318 bp downstream
Tssr145249	transcription start site region 145249	304 bp downstream
Tssr145250	transcription start site region 145250	285 bp downstream
Tssr145251	transcription start site region 145251	261 bp downstream
Tssr145252	transcription start site region 145252	247 bp downstream
Tssr145253	transcription start site region 145253	229 bp downstream
Tssr145254	transcription start site region 145254	205 bp downstream
Tssr145255	transcription start site region 145255	181 bp downstream
Tssr145256	transcription start site region 145256	851 bp upstream
Tssr145257	transcription start site region 145257	1275 bp upstream
Tssr145258	transcription start site region 145258	1297 bp upstream