rs263570332 SNP Detail

Summary

• ID
  rs263570332
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:9529295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGAAGT CAAGGTCTAA
  GTATTTTATG GATTCTGAGG AGAATTATGA TGACCATATA ATGGATTCTC TGAATATAAA
  AGCAACCCTG TGTATTTCAA AGAAGACACC TTCCTTAGCA TACTACTGAA TTATTCATCA
  GCAATCTAAC ATGAATCTGC CAAAGCTAAA GTATGTTGAA GAAATACATT ATAGAGTAAC
  K
  TCTAAACTCT AGACACTAGA AATACAGTTT TGGTGAATAC ACAAACCTCT CGTTTCTGGC
  CATTAATTTA TCATGGGTAT CTAGGGTTTT AGAACTCCAT AAACAGTCAA AACAACAATG
  GCTTGATTTT TCAGTCTAAT ACAGTTTTGG AAGCGATCAT CCAAAAAGCT CCAACAAAGA
  ACTGATATGA GGTTTCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392986007	MGP_WTSI_15_9458964	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263570332					SNP	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392986007	MGP_WTSI_15_9458964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9529295 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il7r	interleukin 7 receptor			Intron
				Noncoding-Transcript-Variant
Rr186	regulatory region 186			531 bp proximal
Rr499183	regulatory region 499183			446 bp distal
Rr499184	regulatory region 499184			609 bp proximal
Tssr130646	transcription start site region 130646			726 bp downstream
Tssr130647	transcription start site region 130647			706 bp downstream
Tssr130648	transcription start site region 130648			669 bp downstream
Tssr133701	transcription start site region 133701			1157 bp upstream
Tssr133702	transcription start site region 133702			1121 bp upstream
Tssr133703	transcription start site region 133703			488 bp downstream
Tssr133704	transcription start site region 133704			529 bp downstream
Tssr133705	transcription start site region 133705			604 bp downstream
Tssr133706	transcription start site region 133706			641 bp downstream
Tssr133707	transcription start site region 133707			659 bp downstream
Tssr133708	transcription start site region 133708			823 bp downstream
Tssr133709	transcription start site region 133709			925 bp downstream
Tssr133710	transcription start site region 133710			1102 bp downstream