rs263571609 SNP Detail

Summary

• ID
  rs263571609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106016601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTCGGT TGTGTTGGGG
  TGCCCAGGAC TAGGTGGGGT GGGAGTGCTG CGTTCTGATG ATGGTGAGTG GTCTTTATTT
  CTGTTAGTAG GATTCTTACG TTTGCCTTTC GCCATCTGGT AATCTGTGAA GCTAGCTGTT
  ATAGTTGTCT CTGTTAAGAG CTTGTTCTTC AGGTGACCCT GTTAGCCTCT ATAAGCAGAT
  Y
  TGGGAGGGTA GCTCTTACCT TAGTTTGAGT GGGCAGAGTA TTCTCTGCAG GCAAGCTCTC
  TTCTTGCAGT GCATGAAAGC TCACTATACT CCTTTTCTAA CCTATGTAGC CCTCACTAGT
  CTACAAGGGA GGGAGTACAT TCTGCTCTTA ATATAATATA TTATATCTAT CTGGCAAAAC
  AACTTATGCC ATCTCAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	LEWES/EiJ	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ
ss372626838	MGP_WTSI_7_113560908	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	LEWES/EiJ	MA/MyJ	NZO/HlLtJ	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ
rs263571609					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372626838	MGP_WTSI_7_113560908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106016601 () rs orientation: forward

Symbol	Name	Function Class
Gvin-ps6	GTPase, very large interferon inducible, pseudogene 6	454 bp downstream