rs263572534 SNP Detail

Summary

• ID
  rs263572534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104496940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAACTTT GTGTGCATCG
  ATGCTTTGCC TGCACATGTC TGTATAAGGA TATCCGATCC CCTGGAACTG GAGTTGCAGA
  TGGTTGTGAG CTGCCATGAG GGTGACTCGA ACCTGGGTCC TCCAGAACAG CAGACAGTAC
  TTTTAAACAC TGAACCATTC CTCCAGGTCC AGGAGTTGCT AAACGTAAAG TTTAGCACGA
  Y
  GAAGGGAGAT GATTCTAGAC TGAAACTCAG AACTAGAGAA CAGAGTGAAG AGTAGCAGAA
  GTGGTAGACA GATGGGTGAA TCTCTTGCTC TCCTGATTTA AGAGATGAAT AACCATTTAA
  AATAAAAAGC CTAAATTGTG TTTTTAAATT ACTGTTTTGT GTGTATATGT ATATAAGTGT
  GTGATATGTG TGTGTGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323836957	CHEV_11_104467428	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263572534					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104496940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	1672 bp proximal
Gm74398	predicted gene, 74398	1879 bp downstream
Itgb3	integrin beta 3	1886 bp upstream
Rr403025	regulatory region 403025	1765 bp upstream
Rr457855	regulatory region 457855	1396 bp proximal
Tssr105409	transcription start site region 105409	1662 bp upstream
Tssr105410	transcription start site region 105410	1886 bp upstream
Tssr105411	transcription start site region 105411	1912 bp upstream
Tssr105412	transcription start site region 105412	1926 bp upstream