rs263573680 SNP Detail

Summary

• ID
  rs263573680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174128067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT TGGAGGACAC TCAGTGGTGG
  W
  ATAGGGTTCT TTACGGGTGC CCTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320627360	CHEV_2_174111775	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263573680					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174128067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	334 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374310	regulatory region 374310	682 bp upstream
Tssr790	transcription start site region 790	1981 bp downstream
Tssr22087	transcription start site region 22087	1948 bp downstream
Tssr22088	transcription start site region 22088	1649 bp downstream
Tssr22089	transcription start site region 22089	990 bp downstream
Tssr22090	transcription start site region 22090	955 bp downstream
Tssr22091	transcription start site region 22091	910 bp downstream
Tssr28006	transcription start site region 28006	1090 bp upstream
Tssr28007	transcription start site region 28007	109 bp upstream