rs263575226 SNP Detail

Summary

• ID
  rs263575226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8971264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTATAG AGTGAATATA
  AAGCACCCAT TGTTGAAGTA AAAATGATAA CTGAATCACC CAACTTATGT CAAATGGCTT
  TCTCTGAGAA GAGGTATGAG TCAGTGAGTC TCGTGTAACA TGCTGTAGAA ATGTCCAGCA
  TCCCACAGAA AGTTGAGGCT CACTCTGGCA TCAGAGCATG CAGAAAAGTG TGGCTTGTTT
  Y
  TCACTTAAGA CACACTCTCT CATTCTCTAT TTTTTTTTTT TTTTTTTGCT TGTTTTTCTG
  GCCTATTTCA ATGTCCTTCA CAATCTTTCT CTTCAAGAAG AAAAAAAAAA TCACTATTAT
  CTGTATAAAC TCAACAGCTA AGCGGTTTCT CCACTTTATC ATGCTGTCAT TTTCCTTAAT
  CCCTTGGCCT TTGGCAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886810	CHEV_12_8928070	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263575226					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8971264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	134 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	808 bp upstream
Rr403227	regulatory region 403227	541 bp upstream
Rr462715	regulatory region 462715	within coordinates
Rr462716	regulatory region 462716	345 bp proximal
Rr462717	regulatory region 462717	482 bp proximal
Rr462718	regulatory region 462718	585 bp proximal
Rr462719	regulatory region 462719	1339 bp proximal
Tssr112751	transcription start site region 112751	334 bp upstream
Tssr112752	transcription start site region 112752	423 bp upstream
Tssr112753	transcription start site region 112753	443 bp upstream
Tssr112754	transcription start site region 112754	753 bp upstream
Tssr112755	transcription start site region 112755	778 bp upstream
Tssr112756	transcription start site region 112756	797 bp upstream
Tssr115725	transcription start site region 115725	580 bp downstream