rs263580521 SNP Detail

Summary

• ID
  rs263580521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164663875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGTCAGT ATTTTTATCA
  GTGTCTTCCT AGGTAAGGGC TAAGAAGATC TTAAAACTCG GGGGAGAGGG ACTCCACTGT
  GACAATCCTT TGACCCTGCC TCATTTCAGC CCTACCTTTG GCGTTCTGTA GACACCTTGT
  TCATTGTTCA AAGCCAAAGT TATTCCATAT GAAAGGGCAT GCTCCTTTCT TCCCAGCCTA
  Y
  ACAGACGAAC CCTTGCCCAG GTTAGGATAA ACACAATGGG CCCGGAAAGG AGCTTTGTGT
  CCAGAGACAG AGGGGGAGGA GGGTAGCCCT TGATTGTCAA CTGTTGCTGC TCTTTAGAAA
  ATACCTGTTA CGTATTTTTA TTCACACTAA TAAAGTCGGT TTTTGTTTTG TTTCACGTTT
  GTGTTTTTTG AGACGGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441591	MGP_WTSI_2_164647455	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263580521					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441591	MGP_WTSI_2_164647455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164663875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12673	CpG island 12673	825 bp proximal
Gm75078	predicted gene, 75078	848 bp upstream
Rr374206	regulatory region 374206	214 bp upstream
Rr569723	regulatory region 569723	313 bp proximal
Rr569724	regulatory region 569724	742 bp proximal
Rr569725	regulatory region 569725	846 bp proximal
Rr569726	regulatory region 569726	1222 bp proximal
Tssr21653	transcription start site region 21653	1006 bp upstream
Tssr21654	transcription start site region 21654	1046 bp upstream
Tssr21655	transcription start site region 21655	1104 bp upstream
Tssr27543	transcription start site region 27543	846 bp upstream
Zswim1	zinc finger SWIM-type containing 1	1058 bp upstream
Zswim3	zinc finger SWIM-type containing 3	mRNA-UTR