rs263586089 SNP Detail

Summary

• ID
  rs263586089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72439631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtgccgtc tgcgccgggc cgcagtgcgg
  ctgcgcgcgc tgggctgctc cgggctggca gggcagcagt ggccgcggcg gcggcggggc
  cgggagcgag cgagggagcg agcggcgtgg gggagctcgg aggcgCCAGG CCCCCGGGGG
  R
  GGGCGGCCGG GGAGGCAGGC CCCCCGAGAG ACCCGTCGGG TTGGATTTTG GGGCCGAGGG
  GGCGCCCGAC CACGGACCTC GTTCTTCAGA CGCCCCCCAG CCCCGGCCGC TGACGGGGGG
  CTGAGGGGCG CCGCCATGCC TCTGCCGCGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323002570	CHEV_9_72380156	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263586089					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72439631 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	491 bp upstream
Cpgi22017	CpG island 22017	within coordinates
Rfx7	regulatory factor X, 7	within coordinates
Rr401508	regulatory region 401508	1691 bp downstream
Rr401509	regulatory region 401509	429 bp downstream
Rr682766	regulatory region 682766	1873 bp distal
Rr682767	regulatory region 682767	1928 bp distal
Rr682768	regulatory region 682768	1372 bp distal
Rr682769	regulatory region 682769	1178 bp distal
Rr682770	regulatory region 682770	within coordinates
Rr682771	regulatory region 682771	377 bp distal
Tssr86008	transcription start site region 86008	592 bp downstream
Tssr86009	transcription start site region 86009	399 bp downstream
Tssr86010	transcription start site region 86010	142 bp downstream
Tssr86011	transcription start site region 86011	78 bp downstream
Tssr86012	transcription start site region 86012	438 bp upstream