rs263588342 SNP Detail

Summary

• ID
  rs263588342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113420123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGTGGCC CACCTTGGTC
  CGACTTATTC TTTGAGGGGA TCCAGCCTGC ACAGGCTCGT GGTTCGGTGC TGGCCCCCTG
  GGTGACCTTG GGAACGCCAC TGCCACTTTT CTTTTTCAAG TCTAGATCCC ACGGTAGCGT
  CCAGGCTGAT CTCGAACTCA CAGCCTTCTC TTTAGTCTCC TGAGTGCTTC TGGCTTTTCA
  R
  GGATGCACTT GGCCTGAGAA CTCCTTAACA TTTTTAAAGA TTTTTATTTT TAATTTCGTG
  TGTGTGTGTG TGTGTGTGTG TATTTGTGCA CGTGAGAGCA ACTGCTCGCA GAATCCAGTA
  GAGGGCGTTG GAGCTGGAGT TACACATGGC ATTTGGAGTC TACCCGAGGT TGGTGCTGAG
  AGCCAAGCCC AGAAAGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910885	CHEV_6_113393156	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263588342					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113420123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	54 bp distal
Jagn1	jagunal homolog 1	within coordinates
Rr132170	regulatory region 132170	1523 bp distal
Rr145547	regulatory region 145547	within coordinates
Rr399832	regulatory region 399832	517 bp downstream
Tssr58212	transcription start site region 58212	535 bp downstream
Tssr58213	transcription start site region 58213	527 bp downstream