rs263597599 SNP Detail

Summary

• ID
  rs263597599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6240872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CGGATGAGCG
  TGCACTAAAC TAGCTCCTGG GATGCAGCCT CCAGAGCCCC AGGTGGGGGA GTGTCCAGAA
  TGAGAAACAA GACACCTCCC AGCTGCCAAG CTTAGTACTG GGGTGGGGGT GATCCTCGAA
  TCGTCGCGGA GTCTCCTGAA CACTGCTCCT TCCTCCCTGG TCGTCTGAAC CCGCAAACCC
  R
  GCTCGGGAGA GCGAGCACTC CCTGCTCCCT CTGGGCTTTG CGACCGGCCA TGTCCCAGAG
  CTCACCGTCC TGCCCGACCC CACGTGACAT GGGGACAGGG GCCACTCACC GCGATCATCA
  CCGTGTCTTC TCCCTGGAAT TTGGCGACGT ACTTATCGCC GCGGTTCACT TCAGATTCGT
  TGAGAGGTCT GAAGCGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520795	CHEV_18_6240870	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263597599					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6240872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9677	CpG island 9677	within coordinates
Gm41664	predicted gene, 41664	within coordinates
Kif5b	kinesin family member 5B	within coordinates
Rr353008	regulatory region 353008	within coordinates
Tssr152353	transcription start site region 152353	292 bp downstream
Tssr152354	transcription start site region 152354	366 bp downstream
Tssr152355	transcription start site region 152355	599 bp downstream
Tssr152356	transcription start site region 152356	614 bp downstream