rs263597655 SNP Detail

Summary

• ID
  rs263597655
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCAATG GTAGCTCCCT
  TGCGAGGTGG GGGACTGTGG CTGGAGACAA GGGAGGGTGA AGGAAGGGAG GGAGGTACAC
  AGGGTGGACC TCTGCAGTCC ACACTGCAGC CCTGCTCAGC TTCTAGAATC TGTGACCCAG
  TTCCCATCGG CTGGTCCTCA CCCACCTTCC CCAGGGCATT GAGGGCTGAG AGAGGGTGTC
  S
  TTTCTGAAGG ATGGCAACTA AAGCTTACCC AAGTCCTTTG CCCGGGATCT TCCCACCATG
  CTTGGGTGCC CCTAAGATGC TAGCAGCATT CCCAGGGCTG TGCAGGAAAG GGATCTGAAG
  GAGGACCAGA ACCAGGGAAA TAATACCCCA TGGCCACGAG GGCATAAAAG AATTAGCCAG
  TCACAAAATG TTGATCTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428923	MGP_WTSI_11_54724098	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263597655					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428923	MGP_WTSI_11_54724098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801422 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	209 bp downstream
Tnip1	TNFAIP3 interacting protein 1	189 bp downstream
Tssr3502	transcription start site region 3502	952 bp upstream
Tssr3503	transcription start site region 3503	480 bp downstream
Tssr101562	transcription start site region 101562	1992 bp downstream
Tssr101563	transcription start site region 101563	1980 bp downstream
Tssr101564	transcription start site region 101564	1959 bp downstream
Tssr101565	transcription start site region 101565	1529 bp downstream
Tssr101566	transcription start site region 101566	1483 bp downstream
Tssr101567	transcription start site region 101567	1120 bp downstream
Tssr101568	transcription start site region 101568	1046 bp downstream
Tssr101569	transcription start site region 101569	963 bp downstream
Tssr101570	transcription start site region 101570	912 bp downstream
Tssr101571	transcription start site region 101571	836 bp downstream
Tssr101572	transcription start site region 101572	792 bp downstream
Tssr101573	transcription start site region 101573	765 bp downstream
Tssr101574	transcription start site region 101574	740 bp downstream
Tssr101575	transcription start site region 101575	693 bp downstream
Tssr101576	transcription start site region 101576	672 bp downstream
Tssr101577	transcription start site region 101577	650 bp downstream
Tssr101578	transcription start site region 101578	565 bp downstream
Tssr108008	transcription start site region 108008	1961 bp upstream
Tssr108009	transcription start site region 108009	1945 bp upstream
Tssr108010	transcription start site region 108010	1525 bp upstream
Tssr108011	transcription start site region 108011	909 bp upstream
Tssr108012	transcription start site region 108012	828 bp upstream
Tssr108013	transcription start site region 108013	808 bp upstream
Tssr108014	transcription start site region 108014	793 bp upstream
Tssr108015	transcription start site region 108015	712 bp upstream
Tssr108016	transcription start site region 108016	650 bp upstream
Tssr108017	transcription start site region 108017	609 bp upstream
Tssr108018	transcription start site region 108018	588 bp upstream
Tssr108019	transcription start site region 108019	519 bp upstream
Tssr108020	transcription start site region 108020	500 bp upstream
Tssr108021	transcription start site region 108021	483 bp upstream
Tssr108022	transcription start site region 108022	440 bp upstream
Tssr108023	transcription start site region 108023	216 bp upstream