rs263611238 SNP Detail

Summary

• ID
  rs263611238
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91400591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTAGTCAT TCGCCACCCC ACCCCCCCAT TCCGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  A
  CTACTGAGCA TGCCCAAGCC CCTGTTATAG ACCCACGAAA ATCTTGTGGA GATTCCACTT
  CTCCGGGATT TAGCCGTGAT TGGGCGGGGG TACCTGAGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325511787	CHEV_17_91492503	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263611238					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91400591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	194 bp distal
Nrxn1	neurexin I	92 bp upstream
Rr334029	regulatory region 334029	within coordinates
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	341 bp upstream
Tssr149871	transcription start site region 149871	305 bp upstream
Tssr149872	transcription start site region 149872	286 bp upstream
Tssr149873	transcription start site region 149873	168 bp upstream
Tssr149874	transcription start site region 149874	134 bp upstream
Tssr149875	transcription start site region 149875	86 bp upstream